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Parallel universes: open access and open source

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February 22, 2006

This article was contributed by Glyn Moody

The growing success of free software has led to a widening of the culture clash between "open" and "closed" to include other domains. One recent skirmish, for example, concerned a particularly important kind of digital code – the sequence of the human genome – and whether it would be proprietary, owned by companies like Celera, or freely available. Openness prevailed, but in another arena – scholarly publishing – advocates of free (as in both beer and freedom) online access to research papers are still fighting the battles that open source won years ago. At stake is nothing less than control of academia's treasure-house of knowledge.

The parallels between this movement - what has come to be known as “open access” – and open source are striking. For both, the ultimate wellspring is the Internet, and the new economics of sharing that it enabled. Just as the early code for the Internet was a kind of proto-open source, so the early documentation – the RFCs – offered an example of proto-open access. And for both their practitioners, it is recognition – not recompense – that drives them to participate.

Like all great movements, open access has its visionary – the RMS figure - who constantly evangelizes the core ideas and ideals. In 1976, the Hungarian-born cognitive scientist Stevan Harnad founded a scholarly print journal that offered what he called “open peer commentary,” using an approach remarkably close to the open source development process. The problem, of course, was that the print medium was unsuited to this kind of interactive development, so in 1989 he launched a Usenet/Bitnet magazine called “Psycoloquy”, where the feedback process of the open peer commentary could take place in hours rather than weeks. Routine today, but revolutionary for scholarly studies back then.

Harnad has long had an ambitious vision of a new kind of scholarly sharing (rather as RMS does with code): one of his early papers is entitled “Post-Gutenberg Galaxy: The Fourth Revolution in the Means of Production of Knowledge”, while a later one is called bluntly: “A Subversive Proposal for Electronic Publishing.” Meanwhile, the aims of the person who could be considered open access's Linus to Harnad's RMS, Paul Ginsparg, a professor of physics, computing and information science at Cornell University, were more modest.

At the beginning of the 1990s, Ginsparg wanted a quick and dirty solution to the problem of putting high-energy physics preprints (early versions of papers) online. As it turns out, he set up what became the arXiv.org preprint repository on 16 August, 1991 – nine days before Linus made his fateful “I'm doing a (free) operating system (just a hobby, won't be big and professional like gnu) for 386(486) AT clones” posting. But Ginsparg's links with the free software world go back much further.

Ginsparg was already familiar with the GNU manifesto in 1985, and, through his brother, an MIT undergraduate, even knew of Stallman in the 1970s. Although arXiv.org only switched to GNU/Linux in 1997, it has been using Perl since 1994, and Apache since it came into existence. One of Apache's founders, Rob Hartill, worked for Ginsparg at the Los Alamos National Laboratory, where arXiv.org was first set up (as an FTP/email server at xxx.lanl.org). Other open source programs crucial to arXiv.org include TeX, GhostScript and MySQL.

In 1994, Harnad espoused the idea of self-archiving in his “Subversive Proposal”, whereby academics put a copy of their papers online locally (originally on FTP servers) as well as publishing them in hardcopy journals. The spread of repositories soon led to interoperability issues. The 1999 Open Archives Initiative (in which Ginsparg was a leading figure) aimed to deal with this by defining a standard way of exposing an article's metadata so that it could be “harvested” efficiently by search engines.

Beyond self-archiving - later termed “green” open access by Harnad – lies publishing in fully open online journals (“gold” open access). The first open access magazine publisher, BioMed Central – a kind of Red Hat of the field – appeared in 1999. In 2001 the Public Library of Science (PLoS) was launched; PLoS is a major publishing initiative inspired by the examples of arXiv.org, the public genomics databases and open source software, and which was funded by the Gordon and Betty Moore Foundation (to the tune of $9 million over five years).

Just as free software gained the alternative name “open source” at the Freeware Summit in 1998, so free open scholarship (FOS), as it was called until then by the main newsletter that covered it - written by Peter Suber, professor of philosophy at Earlham College - was renamed “open access” as part of the Budapest Open Access Initiative in December 2001. Suber's newsletter turned into Open Access News and became one of the earliest blogs; it remains the definitive record of the open access movement, and Suber has become its semi-official chronicler (the Eric Raymond of open access - without the guns).

After the Budapest meeting (funded by speculator-turned-philanthropist George Soros, who played the role taken by Tim O'Reilly at the Freeware Summit), several other major declarations in support of open access were made, notably those at Bethesda and Berlin (both 2003). Big research institutions started actively supporting open access – rather as big companies like IBM and HP did with open source earlier. Key early backers were the Howard Hughes Medical Institute (2002) in the US and the Wellcome Trust (2003) in the UK, the largest private funders of medical research in their respective countries.

Both agreed to pay the page charges that “gold” open access titles need in order to provide the content free to readers – typically $1000 per article. This is not as onerous as it sounds: the annual subscription for a traditional scientific journal can run to $20,000 (even though the authors of the papers receive nothing for their work). For a major research institution, the cumulative cost adds up to millions of dollars a year in subscriptions. This annual tax is very like the licensing fees in the proprietary software world. What an institution saves by refusing to pay these exorbitant subscriptions – as the libraries at Cornell, Duke, Harvard and Stanford Universities have done in the US – it can use to fund page charges, just as companies can use monies saved on software licensing costs to pay for the support and customization they need.

With all this activity, governments started getting interested in open access, and so did the big publishers, worried by the potential loss of revenue (the Microsoft of the scientific publishing world, the Anglo-Dutch company Elsevier, has had operating profits of over 30%). The UK House of Commons Science and Technology committee published a lengthy report recommending obligatory open access for publicly-funded research: it was ignored by the UK government because of pressure from British publishing houses. In 2004, the US NIH issued a draft of its own plans for open access support – and was forced to water them down because of fierce lobbying from science publishers.

Given the many similarities between the respective aims of open source and open access, it is hardly surprising that there are direct links between them. In 2002, MIT released its DSpace digital repository application under a BSD license, while Eprints, the main archiving software used for creating institutional repositories, went open source under the GPL. As the latter's documentation proudly proclaims:

The EPrints software has been developed under GNU/Linux. It is intended to work on any GNU system. It may well work on other UNIX systems too. Other systems people have got EPrints up and running on include Solaris and MacOSX. There are no plans for a version to run under Microsoft Windows.

There is a commercial, supported version too. Open Journal Systems is another journal management and publishing system released under the GPL.

As the mainstream open source projects mature, the applications used by the open access movement could well prove increasingly attractive to coders who are looking for a challenge and an area where they can make a significant contribution – not just to free software, but also to widening free access to knowledge itself.

Glyn Moody writes about open source and open access at opendotdotdot.

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(Log in to post comments)

Go open access!

Posted Feb 22, 2006 17:40 UTC (Wed) by felixfix (subscriber, #242) [Link]

I have subscriptions to two science journals (Nature and Science), as good reading on science rather than from being a scientist, and it has been interesting watching their gradual tentative changes in response to the internet. They do add a lot of value that a mere archive can't duplicate, mainly in the form of explanatory articles that have been dumbed down for scientists in other fields who don't have the specialist background. Whether this will be enough to stay in publication, I don't know. It would be a shame if they had to dumb things down to the Scientific American level, or Discovery.

Re: Go open access!

Posted Feb 27, 2006 17:13 UTC (Mon) by Kluge (subscriber, #2881) [Link]

I agree that Science and Nature offer a lot of value in addition to the peer-reviewed scientific articles they publish. The news articles regarding science policy and the intersection between science and politics/ economics/ etc are particularly valuable. That's one reason I have a subscription to Science myself. Open-access journals will have to show that their scientific standards are as high, and that they reach as wide an audience before they can compete with Science and Nature.

But it's worth noting that the PLOS journals (www.plos.org) are on their way to getting that kind of reputation and readership. In addition, PLOS Biology offers "synopses," summaries written for a general audience, for all research articles. They also have review articles, technical primers, and occasional news articles.

Wes

Parallel universes: open access and open source

Posted Feb 22, 2006 20:24 UTC (Wed) by imres (guest, #12) [Link]

I would like to make three comments on this very timely article:

1. There is a 2005 article by John Willinsky, in FirstMonday, developing this line of reasoning:

The unacknowledged convergence of open source, open access, and open science by John Willinsky
http://www.firstmonday.org/issues/issue10_8/willinsky/

2. Stevan Harnad fiercely and insistently resists the idea of any similarity between the Free Software/Open Source movements and the Open Access movement as can be confirmed by visiting the American Scientist discussion list he moderates:

http://listserver.sigmaxi.org/sc/wa.exe?A2=ind03&L=am...

3. I personally agree much more with the author's and Willinsky's view of convergence than with Harnad's arguments of deep differences. However, I should sadly point out one major, factual and measurable differrence: while the free software/open source movements catch fire like hay and disseminate very easily the open access movement experiences great difficulty to gather steam. Actually, this opens up a very interesting and intriguing question: why is that?

Parallel universes: open access and open source

Posted Feb 22, 2006 23:16 UTC (Wed) by LetterRip (guest, #6816) [Link]

[QUOTE]However, I should sadly point out one major, factual and measurable differrence: while the free software/open source movements catch fire like hay and disseminate very easily the open access movement experiences great difficulty to gather steam. Actually, this opens up a very interesting and intriguing question: why is that?[/QUOTE]

Open Source costs the producer of free software time, in return for which he gets additional free software. Also software is frequently bought by the individual and thus the cost savings can be significant.

Open Access costs the producer time and the organization 1000$ per page, in return for which he might get published. The journal articles are all purchased by the University making them 'free to him' meaning an Open Access Journal has only idealogical value but limited practical economic benefit to the producer.

Thus poor college students can trade time for software they need, but would get little or no benefit from Open Access. For Open Access those who benefit most from consuming Open Access journals are not the same as those who benefit producing the content.

Corporations benefit directly from supporting open source software they use, but thre is no benefit for them in supporting Open Access.

LetterRip

Re: Why isn't Open Acces catching on like wildfire?

Posted Feb 22, 2006 23:24 UTC (Wed) by scripter (subscriber, #2654) [Link]

I've heard it said that "Holders of the older ideas sometimes have to die off before a new one can take hold." Maybe we'll have to wait a few decades before open access can succeed in the scientific community.

Openness in science publications: PubMed Central

Posted Feb 22, 2006 20:57 UTC (Wed) by southey (guest, #9466) [Link]

For openness in science publications, see PubMed Central. Also, if you get an National Institutes of Health (NIH) grant, NIH policy "requests and strongly encourages all investigators to make their NIH-funded peer-reviewed, author's final manuscript" at PubMed Central.

Parallel universes: open access and open source

Posted Feb 23, 2006 11:12 UTC (Thu) by ekj (guest, #1524) [Link]

Good article ! Encourage !

Okay, so some of it is controversial. That's fine: it's thougth-provoking nevertheless, and the article is clearly written and well-articulated.

I don't remember Glyn Moody articles on Lwn before, but I would welcome more of them.

The Greatest OS That (N)ever Was By Glyn Moody

Posted Feb 23, 2006 16:04 UTC (Thu) by grouch (guest, #27289) [Link]

Here's a Glyn Moody article on Wired that you may enjoy (dateline August, 1997): The Greatest OS That (N)ever Was By Glyn Moody

That article has saved me a lot of yapping over the years, as it is a fine chronicle of the beginning of Linux. You will likely see some parallels with the above article in Moody's attention to details beyond dates and names.

The Greatest OS That (N)ever Was By Glyn Moody

Posted Feb 24, 2006 0:36 UTC (Fri) by ordonnateur (guest, #6652) [Link]

Should also read "Rebel Code: Linux and the Open Source Revolution "
same author (ISBN: 0140298045) 2001

Parallel universes: open access and open source

Posted Feb 23, 2006 19:44 UTC (Thu) by thoffman (guest, #3063) [Link]

Seconded! This is great stuff, expanding the horizons of those of us who have been familiar with Free software for a long time, and appreciate knowing about closely-related trends.

Makes me wonder what else is out there beyond the obvious (Wikipedia...)

For instance, I'm aware of the Creative Commons effort but don't really know much about it, other than "kind of like free software, but free content/media". A similar introductory article on that would be nice to get me up to speed.

There should be, and may already be many similar groups, all turning on the friction-free axis of communication the Internet provides to produce collabarative work. Photography, video, movies, recorded music, sheet music, sound samples, fiction of all genres, curriculum & teaching materials from elementary up to post-graduate? Architecture and building plans?

Creative Commons sources

Posted Feb 27, 2006 17:21 UTC (Mon) by Kluge (subscriber, #2881) [Link]

MIT and Rice, at least, are opening up a lot of their course material to the public (for a good article on this subject, see www.insidehighered.com/news/2005/07/29/open). And some authors (Ben Crowell for instance, see www.lightandmatter.com) are producing Free textbooks.

And for many images, as well as some sound and video, there's the Wikimedia Commons (http://commons.wikimedia.org/wiki/Main_Page).

Wes

Parallel universes: open access and open source

Posted Feb 23, 2006 20:24 UTC (Thu) by gravious (guest, #7662) [Link]

Bit of a me too comment, but wow! Totally from left-field: thank you LWN. *Genuflects and mumbles a prayer to the gods of open access/source*

In response to the second poster 'imres', I propose a group hug, less of the wary sidelong glances, huh? ;)

Okay, I'm officially in an odd mood today.

Parallel universes: open access and open source

Posted Feb 24, 2006 1:57 UTC (Fri) by barbara (guest, #3014) [Link]

Interesting article. It's well past time for open access in academia.
Outrageous subscription fees for scientific journals have plagued users
and libraries alike for years. So ... I'm all for electronic editions and
open access.

However, my BS meter went to "high" when I read "Both agreed to pay the
page charges that "gold" open access titles need in order to provide the
content free to readers - typically $1000 per page." Someone is certainly
raking in the moola at $1,000 per page. E-print servers, such as
http://xxx.lanl.gov/ have no fees. So, what extra does a scientific
electronic journal provide beyond an e-print service? 1) refereeing, but
referees donate their services for free! 2) editorial services, but this
does not cost $1000 per page! Sounds like rip-off city to me.



Parallel universes: open access and open source

Posted Feb 24, 2006 5:23 UTC (Fri) by kamil (subscriber, #3802) [Link]

What extra do scientific electronic journals provide beyond an e-print service? They provide what is in many sciences The Holy Graal: impact factor. Until open journals establish impact factors comparable to established traditional ones, the publishers of the latter can demand any outrageous amount of money they feel like...

Parallel universes: open access and open source

Posted Feb 24, 2006 20:25 UTC (Fri) by dps (guest, #5725) [Link]

While I agree open access is good, and a *lot* of the good material is avialable on axvir (the successor to xxx), just being able to make your own material open access is not worth that much: serious study requires access to other people's work too, which means access to those non-free journals.

Even if you do not need to read other people's work you do need to cite it, and doing that without reading at least some of a paper is dangerous. You *can* find some of it online but this is a a major problem unless the author's name is really unusual. (At least some ACM journals do allow an elecronic copy of your institution's web site, and non-zero impact factors.)

I doubt that things will change much unless and until it the current model becomes impossible, which requires not just open access requirements but also affordable alterantives (i.e. not $1000 per page). Publushing technical papers is hard enough even if you are not required to find funding.

Publication charges

Posted Feb 25, 2006 20:21 UTC (Sat) by soundray (guest, #688) [Link]

There seems to be some confusion around publication charges. All open access journals I know of (including BioMed Central and PLoS) charge per article submission, not per page. The charge is for publication, not for review, ie. no charge will be levied for rejected papers. PLoS waives the fee for authors who say they are unable to pay, without means assessment. Most publishers waive the fee for authors at member institutions of certain categories.

Publication fees are by no means unique to open access. Many traditional publishers make authors pay for the privilege to contribute to pools of knowledge which are then sold back to their community at extortionate rates. There are overlength charges, charges for color figures, reprint charges... some even demand a review fee, independent of whether the paper is accepted or rejected.

Some more detailed information is on
http://biology.plosjournals.org/perlserv/?request=get-doc...

Publication charges

Posted Feb 27, 2006 9:15 UTC (Mon) by glynmoody (guest, #34032) [Link]

You're right: I meant "per article", not "per page" - a slip of the OpenOffice.org. Sorry about that. I'll get it changed.


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